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Genomes encoding eukaryotic-like proteins

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PF00083 Sugar (and other) transporter

Copy number in non-pathogens:
Mean=3.74 Stddev=5.34

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Burkholderia sp. RPE64 s 5 35
Rhodococcus jostii NBRC 16295 s 7 45
Burkholderia turbans s 4 26
Burkholderia sp. BT03 s 6 40
Burkholderia gladioli 3848s-5 s 4 30
Pseudonocardia sp. P1 s 5 32
Burkholderia sp. UYPR1.413 s 4 28
Paraburkholderia nodosa DSM 21604 s 5 31
Burkholderia lata s 5 31
Paraburkholderia phytofirmans PsJN s 5 35
Paraburkholderia xenovorans LB400 s 7 43
Burkholderia gladioli BSR3 s 4 29
Mycobacterium smegmatis str. MC2 155 s 4 26
Amycolatopsis jejuensis s 7 42
Pseudonocardia acaciae DSM 45401 s 12 69
Burkholderia cenocepacia s 4 28
Burkholderia multivorans s 4 27
Paraburkholderia xenovorans LB400 s 7 43
Burkholderia cepacia s 5 34
Burkholderia cepacia s 4 26
Burkholderia cepacia s 4 26
Burkholderia cepacia s 4 27
Burkholderia cepacia s 4 27
Burkholderia multivorans s 4 26
Burkholderia multivorans s 4 27
Burkholderia cepacia s 4 26
Burkholderia multivorans s 4 26
Burkholderia cepacia s 4 27
Burkholderia multivorans s 4 27
Burkholderia sp. BT03 s 6 39
Mycobacterium smegmatis str. MC2 155 s 4 26

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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