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Genomes encoding eukaryotic-like proteins

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PF00515 Tetratricopeptide repeat

Copy number in non-pathogens:
Mean=0.98 Stddev=2.45

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Microcystis aeruginosa NIES-843 s 4 11
Chthoniobacter flavus Ellin428 s 5 14
Brachyspira murdochii DSM 12563 s 6 16
Brachyspira hampsonii 30446 s 4 12
Rivularia sp. PCC 7116 s 10 26
Geminocystis herdmanii PCC 6308 s 4 11
Geitlerinema sp. PCC 7105 s 6 18
Leptolyngbya boryana PCC 6306 s 5 15
Calothrix sp. PCC 7103 s 8 21
Calothrix sp. PCC 6303 s 8 22
Pleurocapsa sp. PCC 7319 s 12 31
Brachyspira innocens ATCC 29796 s 6 16
Bradyrhizobium sp. Ec3.3 s 4 12
Brachyspira hyodysenteriae ATCC 27164 s 5 15
Brachyspira alvinipulli ATCC 51933 s 6 18
Nostoc punctiforme PCC 73102 s 8 21
Brachyspira hyodysenteriae WA1 s 6 17
Brachyspira intermedia PWS/A s 8 22
Acaryochloris marina MBIC11017 s 6 18
Myxosarcina sp. GI1 s 4 12
Nostoc sp. KVJ20 s 8 21
Orientia tsutsugamushi s 4 12
Orientia tsutsugamushi s 5 15
Brachyspira hyodysenteriae ATCC 27164 s 6 16
Brachyspira hampsonii s 5 14
Brachyspira hampsonii s 4 12
Brachyspira hampsonii s 6 17

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

Contact

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