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Genomes encoding eukaryotic-like proteins

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PF00688 TGF-beta propeptide

Copy number in non-pathogens:
Mean=0.01 Stddev=0.11

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Verrucomicrobium sp. BvORR106 s 8 1
Clostridium tyrobutyricum s 8 1
Bacillus cereus s 8 1
Bacteroides eggerthii DSM 20697 s 8 1
Enterococcus casseliflavus ATCC 12755 s 8 1
Desmospora sp. 8437 s 8 1
Bacillus cereus Rock4-18 s 8 1
Bacillus cereus Rock3-29 s 8 1
Brevibacillus sp. BC25 s 8 1
Clostridium saccharobutylicum DSM 13864 s 8 1
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 s 8 1
Clostridium sartagoforme AAU1 s 8 1
Paenibacillus alvei DSM 29 s 8 1
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 s 8 1
Clostridium sp. BL8 s 8 1
Clostridium diolis DSM 15410 s 8 1
Lysinibacillus sphaericus OT4b.31 s 8 1
Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 s 8 1
Clostridium ljungdahlii DSM 13528 s 8 1
Clostridium saccharobutylicum DSM 13864 s 8 1
Bacillus cereus s 8 1
Clostridium tyrobutyricum s 8 1
Clostridium tyrobutyricum s 8 1
Clostridium ljungdahlii DSM 13528 s 8 1
Clostridium tyrobutyricum s 8 1
Bacillus thuringiensis s 8 1
Bacillus thuringiensis s 8 1
Methyloversatilis sp. RAC08 s 8 1
Moorella thermoacetica s 8 1
Paenibacillus odorifer s 8 1
Paenibacillus odorifer s 8 1
Paenibacillus odorifer s 8 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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