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Genomes encoding eukaryotic-like proteins

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PF00710 Asparaginase, N-terminal

Copy number in non-pathogens:
Mean=0.85 Stddev=0.75

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Parasutterella excrementihominis YIT 11859 s 9 8
Sutterella parvirubra YIT 11816 s 4 4
Escherichia coli DEC14A s 4 4
Polaromonas sp. CF318 s 4 4
Herbaspirillum sp. CF444 s 4 4
Cupriavidus taiwanensis STM 6070 s 4 4
Burkholderia sp. WSM4176 s 5 5
Burkholderiales bacterium 1_1_47 s 8 7
Sutterella wadsworthensis 3_1_45B s 4 4
Sutterella wadsworthensis 2_1_59BFAA s 4 4
Herbaspirillum frisingense GSF30 s 4 4
Sutterella wadsworthensis HGA0223 s 5 5
Bacillus endophyticus DSM 13796 s 6 6
Escherichia coli s 5 5
Escherichia coli s 5 5
Herbaspirillum hiltneri N3 s 4 4
Escherichia coli s 4 4
Pseudomonas putida s 4 4
Bacillus paralicheniformis s 4 4
Salmonella enterica s 4 4
Salmonella enterica s 4 4
Escherichia coli s 5 5
Bacillus megaterium s 5 5
Bacillus megaterium s 5 5
Burkholderiales bacterium YL45 s 6 6
Escherichia coli s 4 4
Escherichia coli s 4 4
Escherichia coli s 4 4
Bacillus megaterium s 5 5
Bacillus megaterium s 4 4

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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