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Genomes encoding eukaryotic-like proteins

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PF00831 Ribosomal L29 protein

Copy number in non-pathogens:
Mean=1.00 Stddev=0.09

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia testacea NBRC 100365 s 11 2
Mycobacterium tuberculosis s 11 2
Klebsiella variicola s 11 2
Escherichia coli s 23 3
Chlamydia psittaci 01DC11 p 11 2
Salmonella enterica subsp. enterica serovar Typhimurium s 11 2
Herbaspirillum rubrisubalbicans Os34 s 11 2
Enterococcus mundtii crl1656 s 11 2
Vibrio harveyi 1DA3 s 11 2
Butyrivibrio sp. AE2032 s 11 2
Tissierellia bacterium S5-A11 s 11 2
Bradyrhizobium japonicum s 11 2
Listeria monocytogenes s 11 2
Vibrio parahaemolyticus s 11 2
Burkholderia pseudomallei s 11 2
Neisseria gonorrhoeae s 11 2
Salmonella enterica subsp. enterica s 11 2
Bacillus cereus s 11 2
Bacillus cereus s 11 2
Pseudomonas aeruginosa s 11 2
Chlamydia psittaci s 11 2
Chlamydia psittaci s 11 2
Proteus mirabilis s 11 2
Streptococcus pneumoniae s 11 2
Staphylococcus aureus s 11 2
Acinetobacter baumannii s 11 2
Aeromonas hydrophila s 11 2
Klebsiella pneumoniae s 11 2
Lactobacillus reuteri s 11 2
Campylobacter coli s 11 2
Escherichia coli s 11 2
Escherichia coli s 11 2
Pseudomonas aeruginosa s 11 2
Campylobacter coli s 11 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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