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Genomes encoding eukaryotic-like proteins

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PF00884 Sulfatase

Copy number in non-pathogens:
Mean=3.45 Stddev=7.12

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Haloferula sp. BvORR071 s 4 32
Verrucomicrobium sp. BvORR034 s 5 40
Verrucomicrobium sp. BvORR106 s 5 42
Zobellia galactanivorans s 10 75
Bacteroides thetaiotaomicron s 4 35
Chthoniobacter flavus Ellin428 s 5 42
Bacteroides sp. 3_1_13 s 4 37
Rhodopirellula baltica SWK14 s 16 118
Cyclobacterium marinum DSM 745 s 9 70
Algoriphagus machipongonensis s 4 39
Arenibacter certesii DSM 19833 s 4 35
Parabacteroides gordonii DSM 23371 s 4 38
Echinicola pacifica DSM 19836 s 12 89
Bacteroides sp. D2 s 4 34
Bacteroides ovatus CL02T12C04 s 4 39
Bacteroides ovatus CL03T12C18 s 4 32
Bacteroides xylanisolvens CL03T12C04 s 4 36
Ochrovirga pacifica s 7 57
Hungatella hathewayi 12489931 s 6 52
Arenibacter algicola s 5 45
Parabacteroides gordonii MS-1 s 4 39
Bacteroides ovatus s 4 39
Bacteroides thetaiotaomicron s 4 32
Bacteroides ovatus s 4 34
Zobellia galactanivorans s 8 61
Bacteroides xylanisolvens s 4 38
Bacteroides xylanisolvens s 5 42
Bacteroides ovatus s 4 32

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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