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Genomes encoding eukaryotic-like proteins

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PF01016 Ribosomal L27 protein

Copy number in non-pathogens:
Mean=1.00 Stddev=0.11

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptococcus pneumoniae s 8 2
Bacillus cereus s 8 2
Bordetella pertussis s 8 2
Streptococcus pneumoniae s 8 2
Clostridioides difficile s 8 2
Campylobacter coli s 8 2
Bifidobacterium longum s 8 2
Hungatella hathewayi DSM 13479 s 8 2
Bacillus thuringiensis Bt407 s 8 2
Streptococcus pneumoniae GA56348 s 8 2
Lactobacillus farciminis KCTC 3681 = DSM 20184 s 8 2
Streptococcus sp. C300 s 8 2
Anaplasma marginale str. Washington Okanogan p 8 2
Anaplasma marginale str. South Idaho p 8 2
Lactobacillus farciminis KCTC 3681 = DSM 20184 s 8 2
Mycoplasma alkalescens 14918 s 8 2
Hungatella hathewayi 12489931 s 8 2
Bacillus thuringiensis Bt407 s 8 2
Staphylococcus aureus s 8 2
Butyrivibrio sp. AE2032 s 8 2
Tissierellia bacterium S5-A11 s 8 2
Xanthomonas euvesicatoria s 8 2
Chlamydia psittaci s 8 2
Aeromonas hydrophila s 8 2
Acinetobacter baumannii s 8 2
Escherichia coli s 8 2
Bradyrhizobium canariense s 8 2
Klebsiella aerogenes s 8 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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