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Genomes encoding eukaryotic-like proteins

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PF01018 GTP1/OBG

Copy number in non-pathogens:
Mean=0.98 Stddev=0.14

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptococcus pneumoniae s 7 2
Streptococcus pneumoniae s 7 2
Streptococcus pneumoniae s 7 2
Bacillus cereus s 7 2
Salmonella enterica subsp. enterica serovar Typhi s 7 2
Escherichia coli s 7 2
Campylobacter coli s 7 2
Campylobacter coli s 7 2
Helicobacter pylori s 7 2
Bacillus thuringiensis Bt407 s 7 2
Streptococcus agalactiae GB00986 s 7 2
Fusobacterium sp. oral taxon 370 str. F0437 s 7 2
Anaplasma marginale str. Washington Okanogan p 7 2
Pseudonocardia sp. P2 s 7 2
Mycobacterium tuberculosis TKK_04_0112 s 7 2
Bacillus thuringiensis Bt407 s 7 2
Anaplasma marginale str. St. Maries p 7 2
Anaplasma marginale str. Florida p 7 2
Staphylococcus aureus s 7 2
Vibrio shiloi A203 s 7 2
Butyrivibrio sp. AE2032 s 7 2
Tissierellia bacterium S5-A11 s 7 2
Staphylococcus aureus s 7 2
Campylobacter jejuni s 7 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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