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Genomes encoding eukaryotic-like proteins

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PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family

Copy number in non-pathogens:
Mean=0.13 Stddev=0.36

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia yamanashiensis NBRC 100130 s 5 2
Nocardia mexicana NBRC 108244 s 5 2
Nocardia seriolae s 5 2
Nocardia seriolae s 5 2
Nocardia crassostreae s 5 2
Nocardia inohanensis NBRC 100128 s 5 2
Nocardia niigatensis NBRC 100131 s 5 2
Nocardia concava NBRC 100430 s 5 2
Nocardia otitidiscaviarum NBRC 14405 s 5 2
Nocardia transvalensis NBRC 15921 s 5 2
Rhodococcus erythropolis SK121 s 5 2
Stigmatella aurantiaca DW4/3-1 s 5 2
Mycobacterium sp. UM_RHS s 5 2
Mycobacterium sp. UM_WWY s 5 2
Stigmatella aurantiaca DW4/3-1 s 5 2
Stenotrophomonas sp. RIT309 s 5 2
Nocardia seriolae s 5 2
Lysobacter capsici s 5 2
Lysobacter capsici s 5 2
Mycobacterium confluentis s 5 2
Mycobacterium riyadhense s 5 2
Mycobacterium sp. UM_CSW s 5 2
Mycobacterium mucogenicum s 5 2
Mycobacterium mucogenicum s 5 2
Mycobacterium gordonae s 5 2
Mycobacterium malmoense s 5 2
Nocardia seriolae s 5 2
Nocardia seriolae s 5 2
Stenotrophomonas rhizophila s 5 2
Nocardia seriolae s 5 2
Stenotrophomonas maltophilia s 5 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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