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Genomes encoding eukaryotic-like proteins

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PF01163 RIO1 family

Copy number in non-pathogens:
Mean=0.18 Stddev=0.40

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Escherichia coli s 4 2
Stenotrophomonas maltophilia s 4 2
Kutzneria sp. 744 s 4 2
Serratia odorifera DSM 4582 s 4 2
Stenotrophomonas maltophilia S028 s 4 2
Xanthomonas campestris pv. campestris str. CN16 s 4 2
Xanthomonas campestris pv. campestris str. CN15 s 4 2
Xanthomonas campestris pv. campestris str. CN14 s 4 2
Xanthomonas campestris JX s 4 2
Xanthomonas campestris pv. raphani 756C s 4 2
Xanthomonas campestris pv. campestris str. 8004 s 4 2
Stenotrophomonas rhizophila s 4 2
Xanthomonas arboricola 3004 s 4 2
Cobetia amphilecti s 4 2
Stenotrophomonas maltophilia s 4 2
Endozoicomonas ascidiicola s 4 2
Endozoicomonas ascidiicola s 4 2
Sporosarcina ureae s 4 2
Vibrio lentus s 4 2
Stenotrophomonas rhizophila s 4 2
Stenotrophomonas sp. LM091 s 4 2
Stenotrophomonas maltophilia s 4 2
Stenotrophomonas maltophilia s 4 2
Xanthomonas campestris pv. campestris str. ATCC 33913 s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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