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Genomes encoding eukaryotic-like proteins

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PF01230 HIT domain

Copy number in non-pathogens:
Mean=1.94 Stddev=0.97

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia mexicana NBRC 108244 s 5 7
Streptomyces turgidiscabies s 4 6
Nocardia kruczakiae NBRC 101016 s 4 6
Nocardia puris NBRC 108233 s 4 6
Nocardia vaccinii NBRC 15922 s 5 7
Nocardia thailandica NBRC 100428 s 4 6
Nocardia tenerifensis NBRC 101015 s 4 6
Gordonia aichiensis NBRC 108223 s 4 6
Mycobacterium abscessus s 4 6
Mycobacterium abscessus s 4 6
Mycobacterium abscessus s 4 6
Mycobacterium abscessus s 4 6
Mycobacterium abscessus s 4 6
Mycobacterium abscessus s 4 6
Frankia sp. CN3 s 4 6
Streptomyces turgidiscabies Car8 s 4 6
Actinopolymorpha alba DSM 45243 s 11 13
Salinispora arenicola CNX482 s 4 6
Nocardia brasiliensis ATCC 700358 p 4 6
Actinomadura madurae LIID-AJ290 s 6 8
Nocardia nova SH22a s 5 7
Micrococcus luteus s 4 6
Mycobacterium abscessus s 4 6
Mycobacterium abscessus s 4 6
Lentzea kentuckyensis s 4 6

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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