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Genomes encoding eukaryotic-like proteins

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PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit

Copy number in non-pathogens:
Mean=1.38 Stddev=1.24

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Faecalicatena contorta s 4 7
Clostridium sporogenes ATCC 15579 s 4 7
Clostridium sp. D5 s 4 7
Clostridium botulinum F str. Langeland s 4 7
Clostridium botulinum A3 str. Loch Maree s 4 7
Clostridium sporogenes s 4 7
Clostridium grantii DSM 8605 s 4 7
Blautia schinkii DSM 10518 s 4 7
Clostridium sporogenes s 4 7
Clostridium sporogenes s 4 7
Clostridium sporogenes s 4 7
Clostridium sporogenes s 4 7
Clostridium sporogenes s 4 7
Clostridium sporogenes s 4 7
Clostridium botulinum s 4 7
Clostridium sporogenes s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium sporogenes s 4 7
Clostridium botulinum s 4 7
Clostridium sporogenes s 4 7
Oxobacter pfennigii s 4 7
Clostridium botulinum s 4 7
Clostridium botulinum s 4 7
Clostridium sporogenes s 4 7

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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