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Genomes encoding eukaryotic-like proteins

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PF01632 Ribosomal protein L35

Copy number in non-pathogens:
Mean=1.00 Stddev=0.09

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia otitidiscaviarum NBRC 14405 s 10 2
Neisseria meningitidis s 10 2
Enterococcus faecium s 10 2
Enterococcus faecium s 10 2
Klebsiella variicola s 10 2
Escherichia coli s 10 2
Escherichia coli s 10 2
Leptospira interrogans serovar Copenhageni str. Fiocruz LV3726 s 10 2
Chlamydia psittaci 01DC11 p 10 2
Didymococcus colitermitum TAV2 s 10 2
Opitutaceae bacterium TAV1 s 10 2
Treponema pedis isoM1220 s 10 2
Treponema pedis isoM1224 s 10 2
Bradyrhizobium sp. USDA 3384 s 10 2
Clostridium sp. 7_2_43FAA s 10 2
Clostridium sartagoforme AAU1 s 10 2
Pseudonocardia sp. P2 s 10 2
Butyrivibrio sp. AE2032 s 10 2
Tissierellia bacterium S5-A11 s 10 2
Staphylococcus aureus s 10 2
Enterococcus avium s 10 2
Staphylococcus aureus subsp. aureus s 10 2
Campylobacter jejuni s 10 2
Enterococcus avium s 10 2
Francisella tularensis subsp. holarctica s 10 2
Opitutaceae bacterium TSB47 s 10 2
Chlamydia psittaci s 10 2
Acinetobacter pittii s 10 2
Streptobacillus moniliformis s 10 2
Aeromonas hydrophila s 10 2
Acinetobacter baumannii s 10 2
Escherichia coli s 10 2
Klebsiella pneumoniae s 10 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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