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Genomes encoding eukaryotic-like proteins

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PF02410 Ribosomal silencing factor during starvation

Copy number in non-pathogens:
Mean=0.98 Stddev=0.16

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Sphingomonas-like bacterium B12 s 6 2
Streptococcus pneumoniae s 6 2
Streptococcus suis s 6 2
Escherichia coli s 6 2
Campylobacter coli s 6 2
Campylobacter coli s 6 2
Salmonella enterica subsp. enterica serovar Newport s 6 2
Acinetobacter baumannii 1440750 s 6 2
Acinetobacter sp. 478810 s 6 2
Ruminococcus albus 8 s 6 2
Peptoniphilus sp. oral taxon 386 str. F0131 s 6 2
Streptococcus sp. GMD1S s 6 2
Streptococcus sp. GMD2S s 6 2
Streptococcus sp. GMD6S s 6 2
Pseudonocardia sp. P2 s 6 2
Candidatus Liberibacter solanacearum CLso-ZC1 s 6 2
Acinetobacter baumannii 45002_9 s 6 2
Butyrivibrio sp. AE2032 s 6 2
Tissierellia bacterium S5-A11 s 6 2
Vibrio harveyi s 6 2
Vibrio cholerae O1 biovar El Tor s 6 2
Escherichia coli s 6 2
Klebsiella variicola s 6 2
Bacillus amyloliquefaciens s 6 2
Bacillus subtilis s 6 2
Acinetobacter baumannii s 6 2
Staphylococcus aureus s 6 2
Enterococcus faecium s 6 2
Serratia marcescens s 12 3
Escherichia coli s 6 2
Staphylococcus aureus s 6 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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