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Genomes encoding eukaryotic-like proteins

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PF02576 RimP N-terminal domain

Copy number in non-pathogens:
Mean=0.94 Stddev=0.24

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Citrobacter freundii str. ballerup 7851/39 s 4 2
Klebsiella variicola s 4 2
Klebsiella variicola s 4 2
Campylobacter coli s 4 2
Campylobacter coli s 4 2
Acinetobacter baumannii 1042969-1265 s 4 2
Acinetobacter baumannii 1046051 s 4 2
Acinetobacter baumannii 564012 s 4 2
Acinetobacter baumannii 1437282 s 4 2
Acinetobacter baumannii 1096934 s 4 2
Acinetobacter baumannii 10519 s 4 2
Acinetobacter baumannii 1062314 s 4 2
Acinetobacter baumannii 1237893 s 4 2
Acinetobacter baumannii 73736 s 4 2
Acinetobacter baumannii 1000160 s 4 2
Acinetobacter sp. 1294243 s 4 2
Acinetobacter sp. 883425 s 4 2
Acinetobacter baumannii 981176 s 4 2
Acinetobacter baumannii 24812_4 s 4 2
Acinetobacter baumannii 24860_10 s 4 2
Acinetobacter baumannii 24860_2 s 4 2
Acinetobacter baumannii 722310 s 4 2
Acinetobacter baumannii 44467_10 s 4 2
Acinetobacter baumannii 44467_6 s 4 2
Acinetobacter baumannii 96512 s 4 2
Acinetobacter baumannii 1146103 s 4 2
Butyrivibrio sp. AE2032 s 4 2
Tissierellia bacterium S5-A11 s 4 2
Salmonella enterica subsp. enterica serovar Kentucky s 4 2
Acinetobacter baumannii s 4 2
Bacillus subtilis s 4 2
Aeromonas hydrophila s 4 2
Campylobacter jejuni s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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