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Genomes encoding eukaryotic-like proteins

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PF02734 DAK2 domain

Copy number in non-pathogens:
Mean=0.93 Stddev=1.08

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Mesorhizobium metallidurans STM 2683 s 4 6
[Clostridium] innocuum s 4 6
[Clostridium] hylemonae DSM 15053 s 9 11
Dorea sp. D27 s 4 6
Clostridium sp. HGF2 s 4 6
Anaerostipes caccae DSM 14662 s 4 6
Klebsiella sp. OBRC7 s 4 6
Rhizobium leguminosarum bv. viciae WSM1481 s 4 6
Rhizobium leguminosarum bv. viciae WSM1455 s 4 6
Rhizobium leguminosarum bv. viciae GB30 s 4 6
Rhizobium leguminosarum bv. viciae Vh3 s 4 6
Rhizobium leguminosarum bv. viciae Vc2 s 4 6
Clostridium sp. D5 s 4 6
Erysipelotrichaceae bacterium 21_3 s 4 6
Erysipelotrichaceae bacterium 6_1_45 s 5 7
Erysipelotrichaceae bacterium 2_2_44A s 4 6
[Clostridium] citroniae WAL-17108 s 4 6
Shinella sp. DD12 s 6 8
[Clostridium] innocuum 2959 s 4 6
Rhizobium tropici s 4 6
Blautia schinkii DSM 10518 s 6 8
[Clostridium] innocuum s 4 6
Erysipelotrichaceae bacterium I46 s 4 6
[Clostridium] innocuum s 4 6

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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