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Genomes encoding eukaryotic-like proteins

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PF03590 Aspartate-ammonia ligase

Copy number in non-pathogens:
Mean=0.10 Stddev=0.31

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Alistipes ihumii AP11 s 6 2
Streptococcus pneumoniae s 6 2
Escherichia coli s 6 2
Escherichia coli s 6 2
Clostridium paraputrificum s 6 2
Faecalibacterium prausnitzii s 6 2
Clostridium paraputrificum s 6 2
Anaerotruncus colihominis DSM 17241 s 6 2
[Clostridium] methylpentosum DSM 5476 s 6 2
Streptococcus agalactiae CCUG 28551 s 6 2
Streptococcus agalactiae FSL S3-105 s 6 2
Parabacteroides sp. ASF519 s 6 2
Streptococcus sobrinus TCI-215 s 6 2
Streptococcus sobrinus TCI-28 s 6 2
Parabacteroides gordonii DSM 23371 s 6 2
Parabacteroides goldsteinii CL02T12C30 s 6 2
Mycoplasma iowae 695 p 6 2
Escherichia coli s 6 2
Clostridium botulinum s 6 2
Haemophilus influenzae s 6 2
Parabacteroides sp. HGS0025 s 6 2
Parabacteroides gordonii MS-1 s 6 2
Parabacteroides goldsteinii DSM 19448 = WAL 12034 s 6 2
Escherichia coli s 6 2
Capnocytophaga haemolytica s 6 2
[Clostridium] stercorarium subsp. leptospartum DSM 9219 s 6 2
Pasteurella multocida s 6 2
Clostridium paraputrificum s 6 2
Capnocytophaga haemolytica s 6 2

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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