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Genomes encoding eukaryotic-like proteins

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PF04116 Fatty acid hydroxylase superfamily

Copy number in non-pathogens:
Mean=1.24 Stddev=1.68

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Leptospira licerasiae serovar Varillal str. MMD0835 s 4 9
Flectobacillus major DSM 103 s 4 9
Novosphingobium sp. AP12 s 4 8
Leptospira sp. B5-022 s 5 11
Cyclobacterium marinum DSM 745 s 4 8
Leptospira licerasiae str. MMD4847 s 4 9
Leptospira licerasiae serovar Varillal str. VAR 010 p 4 9
Leptospira fainei serovar Hurstbridge str. BUT 6 s 4 9
Leptospira wolffii serovar Khorat str. Khorat-H2 s 4 8
Leptospira broomii serovar Hurstbridge str. 5399 s 4 9
Leptospira inadai serovar Lyme str. 10 s 4 8
Tenacibaculum ovolyticum DSM 18103 s 7 13
Runella zeae DSM 19591 s 5 10
Pseudomonas alcaligenes OT 69 s 4 8
Leptospira licerasiae ATCC BAA-1110 s 4 9
Endozoicomonas arenosclerae s 4 8
Leptospira alstonii s 4 8
Blastomonas sp. RAC04 s 4 8
Leptospira inadai serovar Lyme s 4 8

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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