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Genomes encoding eukaryotic-like proteins

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PF04248 Domain of unknown function (DUF427)

Copy number in non-pathogens:
Mean=0.53 Stddev=0.88

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Mesorhizobium loti MAFF303099 s 5 5
Mycobacterium simiae ATCC 25275 = DSM 44165 s 5 5
Mycobacterium marinum E11 s 5 5
Bradyrhizobium elkanii WSM2783 s 5 5
Mycobacterium sp. 012931 s 5 5
Streptomyces sp. HGB0020 s 5 5
Mycobacterium liflandii 128FXT s 5 5
Mycobacterium marinum M s 5 5
Mycobacterium gordonae s 6 6
Mycobacterium conspicuum s 5 5
Mycobacterium gordonae s 7 7
Mycobacterium parmense s 5 5
Mycobacterium shimoidei s 5 5
Mycobacterium sp. UM_CSW s 5 5
Mycobacterium kansasii s 5 5
Mycobacterium kansasii s 5 5
Mycobacterium kansasii s 5 5
Mycobacterium gordonae s 5 5
Mycobacterium malmoense s 6 6
Mycobacterium malmoense s 5 5
Mycobacterium malmoense s 5 5
Mycobacterium malmoense s 5 5
Mycobacterium scrofulaceum s 6 6
Mycobacterium scrofulaceum s 5 5
Mycobacterium gordonae s 5 5
Mycobacterium gordonae s 7 7
Mycobacterium shimoidei s 5 5
Mycobacterium gordonae s 7 7
Mycobacterium asiaticum DSM 44297 s 5 5
Mycobacterium mantenii s 5 5
Mycobacterium paraseoulense s 6 6
Mycobacterium kansasii s 5 5
Mycobacterium kansasii s 5 5
Mycobacterium simiae s 5 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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