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Genomes encoding eukaryotic-like proteins

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PF04280 Tim44-like domain

Copy number in non-pathogens:
Mean=0.39 Stddev=0.61

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Vibrio vulnificus NBRC 15645 = ATCC 27562 s 4 3
Mesorhizobium plurifarium s 4 3
Brucella abortus 2308 s 4 3
Brucella abortus 544 s 4 3
Burkholderia sp. WSM4176 s 4 3
Brucella abortus S99 s 4 3
Mesorhizobium ciceri ca181 s 4 3
Brucella abortus str. 2308 A s 4 3
Bradyrhizobium elkanii USDA 94 s 4 3
Eubacterium xylanophilum ATCC 35991 s 5 4
Brucella abortus bv. 4 str. 292 s 4 3
Brucella abortus bv. 2 str. 86/8/59 s 4 3
Brucella abortus NCTC 8038 s 4 3
Brucella abortus A13334 s 4 3
Brucella abortus bv. 1 str. 9-941 s 4 3
Brucella abortus S19 s 4 3
Brucella abortus 2308 s 4 3
Brucella abortus s 4 3
Brucella abortus bv. 4 str. 292 s 4 3
Rhizobium leguminosarum bv. trifolii CB782 s 4 3
Brucella abortus bv. 2 str. 86/8/59 s 4 3
Brucella abortus s 4 3
Brucella abortus s 4 3
Ensifer aridi s 4 3
Ruminococcus flavefaciens s 4 3
Mesorhizobium sp. WSM1497 s 4 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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