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Genomes encoding eukaryotic-like proteins

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PF04565 RNA polymerase Rpb2, domain 3

Copy number in non-pathogens:
Mean=0.98 Stddev=0.17

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 5 2
Nocardia anaemiae NBRC 100462 s 5 2
Nocardia elegans NBRC 108235 s 5 2
Nocardia mexicana NBRC 108244 s 5 2
Nocardia crassostreae s 5 2
Nocardia mikamii NBRC 108933 s 5 2
Nocardia araoensis NBRC 100135 s 5 2
Nocardia pneumoniae NBRC 100136 s 5 2
Nocardia tenerifensis NBRC 101015 s 5 2
Nocardia otitidiscaviarum NBRC 14405 s 5 2
Nocardia transvalensis NBRC 15921 s 5 2
Nocardia farcinica IFM 10152 s 5 2
Enterococcus faecalis s 5 2
Salmonella enterica subsp. enterica serovar Typhi s 5 2
Ruminococcus sp. JC304 s 11 3
Enterococcus faecalis s 5 2
Staphylococcus aureus subsp. aureus s 5 2
Escherichia coli s 5 2
Bifidobacterium longum s 5 2
Pseudoflavonifractor capillosus ATCC 29799 s 5 2
Actinomadura flavalba DSM 45200 s 5 2
Mycobacterium tuberculosis TKK_04_0112 s 5 2
Nocardia brasiliensis ATCC 700358 p 5 2
Actinomadura madurae LIID-AJ290 s 5 2
Acinetobacter baumannii 26016_9 s 5 2
Escherichia coli Nissle 1917 s 5 2
Frankia sp. CpI1-P s 5 2
Butyrivibrio sp. AE2032 s 5 2
Tissierellia bacterium S5-A11 s 5 2
Escherichia coli s 5 2
Bacillus cereus s 5 2
[Haemophilus] parasuis p 5 2
Bacillus cereus s 5 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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