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Genomes encoding eukaryotic-like proteins

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PF05971 Protein of unknown function (DUF890)

Copy number in non-pathogens:
Mean=0.17 Stddev=0.37

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Salmonella enterica subsp. enterica s 4 2
Salmonella enterica subsp. enterica serovar Hadar s 4 2
Vibrio cholerae RC27 s 4 2
Salmonella enterica subsp. enterica serovar Choleraesuis str. SCSA50 s 4 2
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 s 4 2
Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 s 4 2
Vibrio cholerae O395 s 4 2
Vibrio cholerae O395 s 4 2
Salmonella enterica subsp. enterica serovar Choleraesuis s 4 2
Salmonella enterica subsp. enterica serovar Choleraesuis s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Salmonella enterica s 4 2
Escherichia coli s 4 2
Vibrio cholerae s 4 2
Pseudomonas putida s 4 2
Vibrio cholerae s 4 2
Klebsiella pneumoniae subsp. pneumoniae HS11286 s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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