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Genomes encoding eukaryotic-like proteins

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PF06426 Serine acetyltransferase, N-terminal

Copy number in non-pathogens:
Mean=0.38 Stddev=0.56

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bradyrhizobium sp. ORS 278 s 4 3
Rhizobium leguminosarum bv. trifolii WSM1325 s 4 3
Phyllobacterium sp. YR531 s 4 3
Rhizobium leguminosarum bv. phaseoli 4292 s 4 3
Rhizobium leguminosarum bv. trifolii SRDI943 s 4 3
Acinetobacter sp. 216872 s 4 3
Rhizobium leguminosarum bv. viciae GB30 s 4 3
Rhizobium leguminosarum bv. viciae Vh3 s 4 3
Bradyrhizobium sp. Ec3.3 s 4 3
Rhizobium leguminosarum bv. viciae UPM1137 s 4 3
Rhizobium leguminosarum bv. phaseoli FA23 s 4 3
Rhizobium gallicum bv. gallicum R602sp s 4 3
Rhizobium sp. CCGE 510 s 6 4
Acinetobacter baumannii 24845_9 s 4 3
Acinetobacter baumannii BIDMC 57 s 4 3
Rhizobium leguminosarum bv. trifolii CC278f s 4 3
Rhizobium leguminosarum bv. trifolii CC283b s 4 3
Bradyrhizobium sp. BTAi1 s 4 3
Agrobacterium radiobacter K84 s 4 3
Rhizobium tropici s 4 3
Agrobacterium rhizogenes s 4 3
Rhizobium tropici s 4 3
Janthinobacterium lividum s 4 3
Janthinobacterium lividum s 4 3
Escherichia coli s 4 3
Sinorhizobium sp. RAC02 s 4 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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