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Genomes encoding eukaryotic-like proteins

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PF06965 Na+/H+ antiporter 1

Copy number in non-pathogens:
Mean=0.63 Stddev=0.77

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Frankia alni ACN14a s 4 4
Acetobacteraceae bacterium AT-5844 s 5 5
Campylobacter jejuni subsp. jejuni LMG 23216 s 4 4
Campylobacter jejuni subsp. jejuni ATCC 33560 s 4 4
Campylobacter jejuni subsp. jejuni 2008-872 s 4 4
Campylobacter jejuni subsp. jejuni 2008-988 s 4 4
Campylobacter jejuni subsp. jejuni 2008-979 s 4 4
Campylobacter jejuni subsp. jejuni 140-16 s 4 4
Campylobacter jejuni subsp. jejuni LMG 9217 s 4 4
Campylobacter jejuni subsp. jejuni 1997-1 s 4 4
Campylobacter jejuni subsp. jejuni 1893 s 4 4
Campylobacter jejuni subsp. jejuni LMG 23210 s 4 4
Campylobacter jejuni subsp. jejuni 1798 s 4 4
Campylobacter jejuni subsp. jejuni 1928 s 4 4
Campylobacter jejuni subsp. jejuni 60004 s 4 4
Campylobacter jejuni subsp. jejuni 55037 s 4 4
Campylobacter jejuni subsp. jejuni 1997-10 s 4 4
Campylobacter jejuni subsp. jejuni LMG 23263 s 4 4
Campylobacter jejuni subsp. jejuni 1997-4 s 4 4
Campylobacter jejuni subsp. jejuni 1997-7 s 4 4
Sinorhizobium fredii USDA 257 s 4 4
Frankia sp. CpI1-S s 4 4
Pseudomonas syringae s 4 4
Asanoa hainanensis s 4 4
Pseudomonas koreensis s 5 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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