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Genomes encoding eukaryotic-like proteins

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PF07488 Glycosyl hydrolase family 67 middle domain

Copy number in non-pathogens:
Mean=0.10 Stddev=0.32

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paenibacillus riograndensis SBR5 s 5 2
Bacteroides eggerthii DSM 20697 s 9 3
Bacteroides sp. 3_1_13 s 5 2
Bacteroides ovatus ATCC 8483 s 5 2
Enterococcus flavescens ATCC 49996 s 5 2
Bacteroides cellulosilyticus WH2 s 5 2
Dysgonomonas capnocytophagoides DSM 22835 s 5 2
Bacteroides gallinarum DSM 18171 = JCM 13658 s 5 2
Bacteroides sp. 2_2_4 s 5 2
Bacteroides sp. 3_1_23 s 5 2
Bacteroides cellulosilyticus CL02T12C19 s 5 2
Bacteroides ovatus CL02T12C04 s 5 2
Bacteroides xylanisolvens CL03T12C04 s 5 2
Paenibacillus vortex V453 s 5 2
Paenibacillus riograndensis SBR5 s 5 2
Enterococcus flavescens ATCC 49996 s 5 2
Bacteroides ovatus s 5 2
Bacteroides ovatus s 5 2
Bacteroides ovatus s 5 2
Paenibacillus glucanolyticus s 5 2
Paenibacillus glucanolyticus s 5 2
Opitutaceae bacterium TSB47 s 5 2
Micromonospora chokoriensis s 5 2
Blautia sp. YL58 s 5 2
Bacteroides ovatus s 5 2
Bacteroides ovatus s 5 2
Paenibacillus glucanolyticus s 5 2
Bacteroides xylanisolvens s 5 2
Bacteroides xylanisolvens s 5 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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