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Genomes encoding eukaryotic-like proteins

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PF09346 SMI1 / KNR4 family (SUKH-1)

Copy number in non-pathogens:
Mean=0.49 Stddev=1.14

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacillus cereus s 5 7
Bacillus cereus s 6 8
Bacillus cereus s 6 8
Bacillus cereus s 5 7
Bacillus cereus s 4 6
Capnocytophaga sputigena ATCC 33612 s 7 9
Capnocytophaga gingivalis ATCC 33624 s 8 10
Bacillus cereus MM3 s 5 7
Capnocytophaga sp. CM59 s 4 6
Lachnospiraceae bacterium A4 s 6 8
Capnocytophaga cynodegmi DSM 19736 s 5 7
Cardiobacterium valvarum F0432 s 5 7
Bacillus cereus AH1134 s 4 6
Capnocytophaga sp. oral taxon 863 str. F0517 s 4 6
Chryseobacterium gregarium DSM 19109 s 4 6
Myroides odoratimimus CIP 101113 s 4 6
Capnocytophaga granulosa ATCC 51502 s 5 7
Bacillus mycoides s 4 6
Bacillus cereus s 4 6
Bacillus mycoides s 7 9
Bacillus cereus s 4 6
Bacillus cereus s 4 6
Bacillus cereus s 6 8
Bacillus mycoides s 5 7
Bacillus cereus s 4 6
Bacillus thuringiensis s 4 6
Bacillus cereus s 4 6
Bacillus cereus s 4 6
Bacillus cereus s 4 6
Janthinobacterium lividum s 4 6
Bacillus cereus s 7 9
Streptomyces acidiscabies s 4 6
Flavobacterium johnsoniae s 5 7
Bacillus cereus s 5 7
Bacillus mycoides s 4 6
Bacillus thuringiensis s 4 6
Bacillus cereus s 5 7
Bacillus cereus s 5 7
Bacillus cereus s 4 6

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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