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Genomes encoding eukaryotic-like proteins

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PF09364 XFP N-terminal domain

Copy number in non-pathogens:
Mean=0.40 Stddev=0.63

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Mycobacterium abscessus subsp. massiliense CCUG 48898 = JCM 15300 s 4 3
Mycobacterium abscessus s 4 3
Mycobacterium abscessus s 4 3
Rhizobium sullae s 4 3
Mycobacterium abscessus subsp. massiliense CCUG 48898 = JCM 15300 s 4 3
Rhizobium sp. CF142 s 4 3
Pseudomonas aeruginosa str. Stone 130 s 4 3
Leptolyngbya boryana PCC 6306 s 5 4
Calothrix sp. PCC 7103 s 4 3
Rhizobium leguminosarum bv. phaseoli 4292 s 4 3
Synechococcus sp. PCC 7335 s 4 3
Sinorhizobium meliloti WSM4191 s 4 3
Rhizobium leguminosarum bv. viciae Ps8 s 4 3
Frankia discariae s 4 3
Mesorhizobium alhagi CCNWXJ12-2 s 4 3
Mycobacterium abscessus subsp. massiliense CCUG 48898 = JCM 15300 s 4 3
Sinorhizobium meliloti GR4 s 4 3
Sinorhizobium fredii USDA 257 s 4 3
Myxosarcina sp. GI1 s 5 4
Mycobacterium abscessus s 4 3
Pseudomonas aeruginosa s 4 3
Pseudomonas aeruginosa s 4 3
Sphingomonas panacis s 4 3
Nostoc sp. KVJ20 s 5 4
Frondihabitans sp. PAMC 28766 s 4 3
Lactobacillus plantarum s 4 3
Mycobacterium abscessus s 4 3
Lactobacillus casei s 4 3
Mycobacterium tusciae s 4 3
Mycobacterium abscessus s 4 3
Mycobacterium abscessus s 4 3
Mycobacterium abscessus s 4 3
Mycobacterium abscessus s 4 3
Mycobacterium abscessus s 4 3

*p=pathogen;s=symbiont

Release announcements

News

  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16
  • New release 5.0 of Eukaryotic-like domains finished

    16.09.15
    F-Box domain

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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