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Genomes encoding eukaryotic-like proteins

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PF09848 Uncharacterized conserved protein (DUF2075)

Copy number in non-pathogens:
Mean=0.22 Stddev=0.50

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Lactobacillus suebicus DSM 5007 = KCTC 3549 s 5 3
Nocardia crassostreae s 5 3
Lactobacillus reuteri SD2112 s 5 3
Bacillus cereus F65185 s 7 4
Lactobacillus suebicus DSM 5007 = KCTC 3549 s 5 3
Lactobacillus pentosus KCA1 s 5 3
Spiroplasma sabaudiense Ar-1343 s 5 3
Streptococcus oralis s 5 3
Lactobacillus brevis s 5 3
Bacillus thuringiensis s 5 3
Bacillus thuringiensis s 5 3
Lactobacillus plantarum s 5 3
Bacillus cereus s 5 3
Streptomyces atriruber s 5 3
Streptomyces silaceus s 5 3
Clostridium butyricum s 5 3
Lactobacillus brevis s 7 4
Lactobacillus brevis s 5 3
Lactobacillus brevis s 5 3
Clostridium butyricum s 5 3
Lactobacillus plantarum s 5 3
Lactobacillus plantarum s 5 3
Lactobacillus plantarum s 5 3
Enterococcus gallinarum s 5 3
Lactobacillus brevis s 7 4
Nocardiopsis sinuspersici s 7 4
Bacillus cereus s 7 4
Bacillus cereus s 5 3
Bacillus cereus s 5 3
Bacillus cereus s 5 3
Bacillus thuringiensis s 7 4
Lactobacillus reuteri s 5 3
Lactobacillus reuteri s 5 3
Bacillus cereus s 5 3
Bacillus cereus s 5 3
Bacillus cereus s 5 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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