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Genomes encoding eukaryotic-like proteins

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PF12831 FAD dependent oxidoreductase

Copy number in non-pathogens:
Mean=0.62 Stddev=1.44

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Verrucomicrobium sp. BvORR034 s 12 18
Verrucomicrobium sp. BvORR106 s 10 16
Alistipes obesi s 4 7
Paenibacillus riograndensis SBR5 s 7 12
Bacteroides ovatus s 5 8
Paenibacillus phocaensis s 5 8
Chthoniobacter flavus Ellin428 s 12 18
Parabacteroides merdae ATCC 43184 s 4 7
Parabacteroides sp. ASF519 s 5 8
Didymococcus colitermitum TAV2 s 22 33
Cyclobacterium marinum DSM 745 s 8 13
Opitutaceae bacterium TAV1 s 24 36
Clostridium sp. KLE 1755 s 4 7
Runella zeae DSM 19591 s 7 12
Paenibacillus sanguinis 2301083 = DSM 16941 s 4 7
Bacteroides ovatus 3_8_47FAA s 4 7
Bacteroides sp. 1_1_30 s 4 7
Hungatella hathewayi WAL-18680 s 5 8
Bacteroides ovatus CL02T12C04 s 5 8
Bacteroides ovatus CL03T12C18 s 5 8
Parabacteroides johnsonii CL02T12C29 s 5 8
Parabacteroides merdae CL03T12C32 s 5 8
Parabacteroides merdae CL09T00C40 s 4 7
Paenibacillus riograndensis SBR5 s 7 11
Dyadobacter fermentans DSM 18053 s 4 7
Paenibacillus mucilaginosus 3016 s 5 8
Arenibacter algicola s 4 7
Sporobacter termitidis DSM 10068 s 5 9
Bacteroides ovatus s 4 7
Opitutaceae bacterium TSB47 s 12 18
Bacteroides xylanisolvens s 4 7
Bacteroides ovatus s 5 8

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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