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Genomes encoding eukaryotic-like proteins

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PF13432 Tetratricopeptide repeat

Copy number in non-pathogens:
Mean=4.31 Stddev=5.20

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Azospirillum sp. B510 s 5 34
Bradyrhizobium sp. STM 3843 s 6 38
Chthoniobacter flavus Ellin428 s 7 41
Rivularia sp. PCC 7116 s 4 26
Geitlerinema sp. PCC 7105 s 5 35
Leptolyngbya boryana PCC 6306 s 4 27
Pleurocapsa sp. PCC 7319 s 4 27
Stigmatella aurantiaca DW4/3-1 s 9 56
Azospirillum halopraeferens DSM 3675 s 6 38
Bradyrhizobium japonicum USDA 122 s 4 26
Bradyrhizobium sp. Ec3.3 s 5 34
Stigmatella aurantiaca DW4/3-1 s 10 57
Acaryochloris marina MBIC11017 s 6 38
Azospirillum brasilense s 7 43
Bradyrhizobium diazoefficiens SEMIA 5080 s 4 26
Azospirillum brasilense s 8 46
Azospirillum brasilense s 8 47
Azospirillum lipoferum s 8 50
Bradyrhizobium diazoefficiens USDA 110 s 4 27
Bradyrhizobium japonicum s 4 26
Azospirillum brasilense s 8 46
Bradyrhizobium diazoefficiens s 4 26
Stigmatella aurantiaca s 9 56
Bradyrhizobium diazoefficiens USDA 110 s 4 28

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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