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Genomes encoding eukaryotic-like proteins

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PF16757 Alpha-L-fucosidase C-terminal domain

Copy number in non-pathogens:
Mean=0.10 Stddev=0.49

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Zobellia galactanivorans s 16 8
Bacteroides eggerthii DSM 20697 s 5 3
Bacteroides cellulosilyticus DSM 14838 s 12 6
Cellulophaga algicola DSM 14237 s 7 4
Flavobacterium sp. CF136 s 5 3
Cellulophaga baltica NN016038 s 7 4
Bacteroides fragilis str. J-143-4 s 5 3
Bacteroides fragilis str. 3397 N2 s 5 3
Bacteroides fragilis str. 3397 N3 s 5 3
Bacteroides cellulosilyticus WH2 s 12 6
Echinicola pacifica DSM 19836 s 7 4
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 5 3
Bacteroides cellulosilyticus CL02T12C19 s 12 6
Ochrovirga pacifica s 14 7
Nitrospirillum amazonense Y2 s 5 3
Sphingobacterium thalpophilum DSM 11723 s 5 3
Pedobacter glucosidilyticus s 7 4
Polaribacter reichenbachii s 10 5
Eisenbergiella tayi s 5 3
Eisenbergiella tayi s 5 3
Eisenbergiella tayi s 5 3
Eisenbergiella tayi s 5 3
Eisenbergiella tayi s 5 3
Eisenbergiella tayi s 5 3
Eisenbergiella tayi s 5 3
Cellulophaga fucicola s 5 3
Eisenbergiella tayi s 5 3
Sphingobacterium sp. B29 s 10 5
Polaribacter reichenbachii s 10 5
Zobellia galactanivorans s 16 8

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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