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Genomes encoding eukaryotic-like proteins

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PF16901 C-terminal domain of alpha-glycerophosphate oxidase

Copy number in non-pathogens:
Mean=1.03 Stddev=0.92

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Rhizobium rhizogenes NBRC 13257 s 4 5
Sinorhizobium meliloti Rm41 s 4 5
Rhizobium leguminosarum bv. phaseoli 4292 s 4 5
Rhizobium mongolense USDA 1844 s 4 5
Sinorhizobium arboris LMG 14919 s 4 5
Sinorhizobium meliloti WSM4191 s 4 5
Rhizobium leguminosarum bv. viciae UPM1131 s 4 5
Rhizobium leguminosarum bv. viciae UPM1137 s 4 5
Rhizobium gallicum bv. gallicum R602sp s 4 5
Shinella sp. DD12 s 4 5
Sinorhizobium meliloti CCNWSX0020 s 4 5
Rhizobium leguminosarum bv. trifolii CC278f s 4 5
Sinorhizobium meliloti WSM1022 s 4 5
Rhizobium leguminosarum bv. trifolii CC283b s 4 5
Ochrobactrum anthropi ATCC 49188 s 4 5
Ochrobactrum anthropi s 4 5
Agrobacterium rhizogenes s 4 5
Rhizobium leguminosarum bv. trifolii WSM1689 s 4 5
Ochrobactrum anthropi s 4 5
Sinorhizobium meliloti s 4 5
Sinorhizobium medicae WSM419 s 4 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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