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Genomes encoding eukaryotic-like proteins

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PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24

Copy number in non-pathogens:
Mean=0.99 Stddev=0.11

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Corynebacterium diphtheriae s 9 2
Faecalibacterium prausnitzii s 9 2
Escherichia coli s 9 2
Bifidobacterium longum s 9 2
Chlamydia psittaci 02DC21 s 9 2
Salmonella enterica subsp. enterica serovar Enteritidis str. SA19940857 s 9 2
Butyrivibrio sp. AE2032 s 9 2
Actinomyces sp. S6-Spd3 s 9 2
Tissierellia bacterium S5-A11 s 9 2
Bradyrhizobium japonicum s 9 2
Escherichia coli s 9 2
Enterobacter cloacae subsp. cloacae s 18 3
Enterococcus faecium s 9 2
Proteus mirabilis s 9 2
Staphylococcus aureus s 9 2
Salmonella enterica subsp. enterica serovar Typhimurium s 9 2
Aeromonas hydrophila s 9 2
Serratia marcescens s 9 2
Vibrio parahaemolyticus s 9 2
Escherichia coli s 9 2
Escherichia coli s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Corynebacterium diphtheriae s 9 2
Staphylococcus aureus s 9 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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